rs49626136 SNP Detail

Summary

• ID
  rs49626136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37514054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTATTT CTGTGAGCTT
  TACTAGTTTC TAAAACGGTC GTGTGCTGTA ATATAGTGAG TCAGAAAGAG GAAGTTAAAA
  GGCTAAAAAA ATTAAAAAAA AAAAAAAAAG GCGACTACTT CTTCTTCATT TGAATGATCT
  GTCCTAGCTT TTCTGTCTCC TCTCATCTGC AGATGACAGC AGACATTCCC ACACAGGCCC
  Y
  AGCACTCTTT CAGTTCAAAT CACTTCATAA ACTCACCTCT TCAGGAACCT AGTGGGATAG
  CCTAGTCCAG AACTTGCCTG GATCATGACA ACAGTCCCTA TCCTTAATAA AGCCGCCAGT
  GGGTGCCTTT CAAATGGCAG GCCTTGACAC CTCAGCAAGG TCTGTGACTA AGGTGCAATT
  GTGAGACATT CAAGCGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148941560	ENSMUSSNP2165555	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49626136					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37514054 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	29 bp downstream
Rr409535	regulatory region 409535	1270 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	482 bp downstream