rs49623959 SNP Detail

Summary

• ID
  rs49623959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97860413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATAATAG AATGTGACTA
  TAGAACATGT ATATTCGCAG TCAATAAAAA TGCTTCTATC TGTCCTTCTG TATGTATGGT
  GTGTGTGTCC ATTGTGTGCT CTGAAATAAA ATCAAATGGG CTTTACCACA ATTTTTTCTC
  TTTCATCCTA GGGTATTTTC CTACCCTTTA TTTTCTACTA ATTTGAACTC CAAACTCACT
  K
  TATCAGGGTA CTGTCTTGTT GAAGGCAAGT CAATGCTGGG AGCCATTTAA CTCCATTTAT
  CAATCACATG ACACTGGACT TGGTGATATA TTAAGAACAA GATGCCCCCT CCTCCACCCC
  TCAACTTCCC ACTGTTTTGC TTCTTTCTCA TTGTTGAAAC CCAGAATTCA AAACTGGTTT
  GGAGGCTCTG TGTAGAAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60915306	NES16222666	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49623959					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915306	NES16222666	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97860413 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635234	regulatory region 635234	1036 bp distal
Rr635235	regulatory region 635235	within coordinates
Tssr57901	transcription start site region 57901	594 bp upstream