rs49622667 SNP Detail

Summary

• ID
  rs49622667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27255577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTGGCA CCAAGGAAAC
  CCCTGTAAAT TCCCTAAGTG AATAAGTGGG TTAAGAGGCA GGGAGGTCCA TCCCCAGAAG
  CTTTGAGTGC AGAGGGCAGG GTGCTAATCC TGCAGAGGAG GTTACGGCCC TTTCTCAAGC
  CAGGCTGCAT CCTGCAGGGT CTGCTGGCCA GACTGTTTGC TTTTCCCTGC CTATCTGTTT
  Y
  CTTCCCATGA AGAACCTAAG TAGGAAGGGG ACAGGGTAAA TTGTCCCGGC TTCAGAAAAT
  ATAAACCTGG AGGTGACAAG GAAGAGAGAC ATAGACAGTA ACACTGTGCA TCCATTTGTT
  CAATCAATTT CTGTTAGGCT TGGTGGTACT GGGACAGGAG GAATTCAAGG ACTGCCTGAG
  CTACAGAAAG GGCACAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702728	ENSMUSSNP5543300	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49622667					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27255577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			334 bp proximal