rs49622039 SNP Detail

Summary

• ID
  rs49622039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5151998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTACAA GAAAGAAAAC
  TAAAATTCTT AGAAAGTGAG TAATTTATTA ACCATCACAT GGTAATGAGC ATGAGATATC
  CAGATGTCTA AGTGAAAACC TGGGAAATGC CTTTTCTTCC ATAAATCCTT TCAAGTGGGG
  ATAGACAGTG GTTCATTCAT TATCCATTGT GTATCACTGT ATATCTATTG GCTGGTTTCC
  Y
  TGGGTCCCAG GAAATGTGCC AGAGGGAAAA ATACAAGATA CCATAAAAAT CCTAGAAATC
  AACCTTGTAT GACCAGCTTG TTTTTCTTGT GTCCTAGCTT GTTTTTTTCT CAAATAAAAC
  TGTTAAAATA GTAATGAATA GCAAAAGACA AAAGTGTAGA ATTTTTCCAA GTCCTCACTT
  GAGTTGTATG CATTTTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366988	NES15869414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49622039					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366988	NES15869414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5151998 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	1415 bp proximal
Rr573165	regulatory region 573165	1873 bp proximal