rs49621935 SNP Detail

Summary

• ID
  rs49621935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27256622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGCAAG CACTCCACCC
  ATGCCATCCA CTCTCGTTCT CTACCTTTTG GGTTGTGGTT GTTATTGTTG TTGTTGATGA
  TGATGCCTTT TCTTTGTAAC AAACTTTTGT TATATTTAAT CCAGGCTGAC CTTGTCATCA
  TGACCAATTC TCCTGTCTCA CCCCCCTGAG TGTTGAGATT CCAAAGTTTA GGTTACCGCA
  R
  CTTTTAAAAC AAATTTTCAA AAGAATTATT TATTTATTCT ATGTATGTGA GTACACTGTA
  GCTGTCATCA GACACACCAG AAGAGGGCAT CAGATCCCAT TAATGGTTGT GAGCCACCAT
  GTGGTTGCTG GGAATTGAAC TCAGGACCTC TTGAAGAGCA GTCAGTGCTC TTAACCGCTG
  AGCCATCTCT CCAGCCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134702756	ENSMUSSNP4711149	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49621935					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27256622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			401 bp distal