rs49621259 SNP Detail

Summary

• ID
  rs49621259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151617861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGAAAA GAATAAACCT
  GAAGGTGGAC ATGCTGGTAA GTTCAGGTGG CAGGAGGGCC AGGCTGTGGA AGTAAAAGTG
  TTTTGTGTCC CCACTCTCCG TGACAAGGAA TTAAGTCCAT CAGCATATTA TAACTTCAGA
  AATGGACAAC TTGAGCCACG GCCAAGGTGC TATTCAGCCT CTGTAGCTGG CTCTGTGCCA
  Y
  GTGGTTTGAC TGAAAACTCC GATGCCCAGA TCTAGGGGAC CACTAGATGG CTGCGATCCC
  CTCTTGCAGG GTGTGCAGAG TTCTGAGGAG GATGAAAACA CAGAAACTCG GCTTCTGGAG
  CAGATCTCAG TGTTCCACCA GCTTTCCTTG CTTCAGGCTC CAGTGCGCTC GGAAGGCACC
  CATTAGCTTT GCCAAAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61099917	NES16613617	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49621259					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099917	NES16613617	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151617861 () rs orientation: forward

Symbol	Name	Function Class
Gm31596	predicted gene, 31596	92 bp upstream
Rr587430	regulatory region 587430	within coordinates
Rr587431	regulatory region 587431	193 bp proximal
Rr587432	regulatory region 587432	1636 bp proximal