rs49619442 SNP Detail

Summary

• ID
  rs49619442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131135452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTATGGA ACAGTGGCTG
  CATATGCAAT TCCGTCTACG CCTCCTTTCC TCAAATGCCT AGGAATAACT AAATACGGGA
  GAAACTGGAG AAAGCTGATT TTAAAAGACA CATCATCTCT TTTCAAAACA ACCCCAAACC
  CAGATACCTC ATCAGTCAAT ACTTACTTGT AACGCAGAAA GAGCCACTGG GTGATCCATA
  R
  CCCAACCAAT ACCATCCCGT TTATTTCTGA TACAGAAAAT GCCCATTTGA CCCGGTCGAA
  GTAATCAAAA AACTTGTCTG GGAGCGGAGG GCTGAGCTCC TTGGGAGGGA CCCTCTCGTG
  CACGACGGTG ATCATGACGG TTGTCAGGAT GAGGTTGAAG AGCGCATACA CAAAGGCGAT
  GCCTGTTTTC CACCACTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080896	NES16597361	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49619442					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080896	NES16597361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131135452 () rs orientation: forward

Symbol	Name	Function Class
Gm66385	predicted gene, 66385	1033 bp upstream
Rr375745	regulatory region 375745	1079 bp downstream
Rr585340	regulatory region 585340	601 bp proximal
Rr585341	regulatory region 585341	1507 bp proximal
Sgms2	sphingomyelin synthase 2	Coding-Synonymous
Tssr35690	transcription start site region 35690	1686 bp downstream