rs49619123 SNP Detail

Summary

• ID
  rs49619123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148991854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT CCCTTAGGAT CTGGGGTTTC
  R
  CTCCTCAAGA GCTTCTAGAG CCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148022739	ENSMUSSNP2591280	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321423667	CHEV_4_148281506	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49619123					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148991854 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr604792	regulatory region 604792	1650 bp distal
Rr604793	regulatory region 604793	178 bp distal
Rr604794	regulatory region 604794	623 bp proximal
Rr604795	regulatory region 604795	882 bp proximal