rs49616286 SNP Detail

Summary

• ID
  rs49616286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50789155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAGATG GAGCTGATGT
  CTGGGACCTG TCAGGTTTAA AGGGAAAATG ATTCCCTTTT CTCAGTCAGT GAGTTTCCAG
  CTATGAAGTC TCAAATTCAC TCAAACCATG AGGCAGGGGC TCCTCACCTA GCAGCTGGGT
  TCTGACCAGA AGTTTGGGGG GTTTGGGGTT ATGCCAAGTT TACTGGGCAA TTTACACGCT
  R
  CATGTCATGA AATCCTTCCA GCCTCTGGGC TGGCCTCTTG CAATAGACAT ATTTGATAAG
  GAGGCTGGGG TTCCTGTGCT CCCGATAGAC ATCATGAGTG TTACATAGCT ATTGGGTGAG
  ACTCAGAGCT CAGGCTACTA GATGTCCCAA GTGACTGAGG GTACATCCAT CTCCTGTCTC
  CCCAGCCGCT AGAACTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133184929	ENSMUSSNP924058	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49616286					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50789155 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr1255	regulatory region 1255	354 bp distal
Rr630076	regulatory region 630076	464 bp proximal