rs49615406 SNP Detail

Summary

• ID
  rs49615406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174334344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGACTT CTGTATACTT
  TTACTCAAAG TACGGATGGA CTGATATAAT CTCTCTGGAG GGTGAAGAGC TGAGAAAAGT
  CTCAAAAGTT CCTGTTGGTC CTGGTGATTC CTATCGATGG GAAATTTTGG AACTGAATAT
  TCAGAATTTG AACAAAGACA TGCAGGCCAG AGAATTATTT GTAGTAAGGT AAAATTGAAA
  Y
  AAACAAACAA ACAACAAGCC CAACCACTCT CTGGAGTTCA AAACACTATT CATTAGTTGG
  CTCACAAAGG AGAAGAGTAT TTTGTGGGGT TTTAGAGAGA AAGAAGAGCC CAGGGGTCGG
  GAAGGTATAT GAAGGTTGCT GAAAGAAGTT GGGGATAGTT GGGAACTCTG TCCAGGTGAC
  ACAGGGTTCA CAATATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148344139	ENSMUSSNP682491	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49615406					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174334344 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	405 bp proximal
Rr572142	regulatory region 572142	508 bp proximal