rs49607454 SNP Detail

Summary

• ID
  rs49607454
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37779262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TCCCATTTCA CTGCTGAGCT
  A
  GGATGACAGA TCATTCTTTA GTCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134812050	ENSMUSSNP4921754	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320712074	CHEV_3_37624035	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49607454					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37779262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13102	CpG island 13102	446 bp distal
Gm5148	predicted gene 5148	753 bp upstream
Gm36620	predicted gene, 36620	within coordinates
Rr575548	regulatory region 575548	1088 bp distal
Rr575549	regulatory region 575549	795 bp distal
Rr575550	regulatory region 575550	133 bp distal
Rr575551	regulatory region 575551	1511 bp proximal
Tssr33056	transcription start site region 33056	775 bp upstream