rs49607283 SNP Detail

Summary

• ID
  rs49607283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139363135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGCCA GGAGCTGTCG
  GGGACTTGGA GATGCTCCCC AGAAACAAGG CTGTAACATA GGTTACCAGA TGCGGCCGAC
  AATGGTGAGC CCATGTGTCC CACCATGGCC TATCACCTCC CCTTCAGTCC TGCCATCCTA
  CTCCAGGCCA CACCTTTGTC ATTTCAGGCC CTCCTAGTGG CCAGCCTTCT GACATCACTG
  Y
  ATGGCACTGC CATCCACAGA GGTGTCAGGC AGCCTGCACA GCCAGCCTGG GACACATGGG
  GCTCACACAC TGCAGGTCGG AACTTGTGCC AGCCTCTCTG CCTTCAGCTC AGCCAGGCCC
  CCCTGCAGCC CTCAGTGGGC GCTCTTAAAC AACCACAGAG TTGCTCCTGA CCCAGGGACT
  GCCAGGGTCT CTGCCGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147676613	ENSMUSSNP6964385	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49607283					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139363135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			489 bp proximal
Rr603269	regulatory region 603269			742 bp proximal