rs49607031 SNP Detail

Summary

• ID
  rs49607031
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141169559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGCCGG GCATTTTACC
  TATAGTTAAT ACTTTCTAAC CTCAGGAAAC CTTATATCTC ATTGCTTCTA ATAAACCCAC
  TTTACAGATC AGGAAGTGGA GACACCTGGC CTTTTGAGCC ATGCCATCCA GCTAGTAAAT
  CACTGTGGAT TGATCCGCCC ATCTGGCATC AGCACCTGAC TACCCACATT TCCTGATGTG
  S
  CCATGTGGGG AGGTTGAAGA AAATTAAGCG ATTTTAAAGT GGCAGGCAAA GTCTCCATGG
  AAATAAAAAG AAGCTAATTC TGTCAATGTC TCTCCCAAGA GTGACCTTCC CAAGTCTATG
  AAATCCATCC AAGGCATACA TAACGGGTAG AGGTTTCAAT GGTGCTTGGC AGGCAGAATC
  ACAAGGCATT AGAATTAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092727	NES16592180	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C	G		C
ss320992372	CHEV_3_141126762	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49607031					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092727	NES16592180	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141169559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	842 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	951 bp distal
Rr586319	regulatory region 586319	928 bp proximal
Rr586320	regulatory region 586320	1184 bp proximal
Rr586321	regulatory region 586321	1525 bp proximal
Rr586322	regulatory region 586322	1812 bp proximal
Rr586323	regulatory region 586323	1868 bp proximal
Tssr1065	transcription start site region 1065	897 bp upstream
Tssr1066	transcription start site region 1066	1463 bp upstream
Tssr1067	transcription start site region 1067	1856 bp upstream
Tssr32031	transcription start site region 32031	1318 bp upstream
Tssr32032	transcription start site region 32032	1381 bp upstream
Tssr32033	transcription start site region 32033	1573 bp upstream
Tssr32034	transcription start site region 32034	1688 bp upstream
Tssr32035	transcription start site region 32035	1744 bp upstream
Tssr32036	transcription start site region 32036	1769 bp upstream
Tssr32037	transcription start site region 32037	1794 bp upstream
Tssr35916	transcription start site region 35916	777 bp downstream
Unc5c	unc-5 netrin receptor C	1801 bp upstream