rs49604741 SNP Detail

Summary

• ID
  rs49604741
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94447423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCATCT GTAATAGGGA
  TCCGATGCCC TCTTCTGGTG TGCCTGAAGA CAGCAATAGT GTACTGACAG ACATGAAATA
  AATAAATAAA TAAATCTTAA AAAAAAAAAA AAAAAGAACT GAATGTACCG TGTTGCTAGA
  AACTTGATCT TAAGTAGTTG TCCTACAAAG CTGCAGTTAT GAGTCCTGAA GTAAATTTTA
  S
  ATAGCAAGGG TCTCCTAAGT GAGGGTTTCT GTCATGTAAT ACAAAAAATT CCTGAATCAT
  GTCCAGCTGC TGAGCATCCA TAATTCTAGT AGGTTTATGT GTGGTTCTAA GACATCAAGA
  GAGACAATAA TATTTATGAA AGACAGCAAG CATACAAATT AGTAAATGCT GAGATCTGTA
  TCTGAAAGGA GACTCAGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147049678	ENSMUSSNP6399195	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49604741					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94447423 () rs orientation: forward

Symbol	Name	Function Class
Rr595335	regulatory region 595335	1900 bp distal
Rr595336	regulatory region 595336	633 bp distal
Rr595337	regulatory region 595337	284 bp proximal