rs49604307 SNP Detail

Summary

• ID
  rs49604307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138880716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TTATGTGTCT GGGTGTTTTG
  Y
  CTGCATGTGT GTCTGTGTAC TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147666610	ENSMUSSNP1087547	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321379831	CHEV_4_138709320	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49604307					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138880716 () rs orientation: forward

Symbol	Name	Function Class
Gm33304	predicted gene, 33304	within coordinates
Rr603121	regulatory region 603121	1819 bp distal
Rr603122	regulatory region 603122	1180 bp proximal
Rr603123	regulatory region 603123	1426 bp proximal