rs49602883 SNP Detail

Summary

• ID
  rs49602883
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149151023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAGGAGC GGCTGTGAAC GAGTGACCTC
  CTCAGGCTGA GTCCTCTCCG GGAACCACAC ACTGACAACC AGTTTCTGAT TTGCATGGAT
  TATCTCCACT TGACCAGATC CTCCGCAGAT ACATTTAAAA GGAGCTGGTA CAATGGTTAA
  W
  ATGATgagag agagagagag agagagagag agagagagag agagagagaA ACAGACACGA
  GATCGCAGAG CGTGGATAAG CTGGGGCGTG CAGAATTGTG TCTCAGAAGA GCTACAGCTC
  CCTCTTCATG CCACAGTTGT AAGATAAGAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321019005	CHEV_3_149108350	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49602883					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149151023 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	137 bp upstream
Rr587324	regulatory region 587324	285 bp distal
Rr587325	regulatory region 587325	within coordinates
Tssr36100	transcription start site region 36100	142 bp upstream
Tssr36101	transcription start site region 36101	121 bp upstream
Tssr36102	transcription start site region 36102	108 bp upstream
Tssr36103	transcription start site region 36103	17 bp upstream
Tssr36104	transcription start site region 36104	within coordinates
Tssr36105	transcription start site region 36105	67 bp downstream