rs49602422 SNP Detail

Summary

• ID
  rs49602422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167262050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CATTGATGGT CTCTCTCTCT CCATGATTCT AGCTTTTGTC
  AAGTTGACAA AGAATCCAGC AGTGTGTGTG CATGTCATAT CCATGTGTGG AGAATTTGCA
  R
  GGGTCAGTTC TCTCTCACCA TGTGTGTCAC AGAAACTAAG CTAAGGTCAT TCGGCTGGTG
  GCATGAGCTG TTACCCAGAA TCATCTCAGC AGTCTTAGTT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148263070	ENSMUSSNP2458397	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49602422					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167262050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12739	CpG island 12739	988 bp proximal
Gm74973	predicted gene, 74973	1097 bp downstream
Rr397507	regulatory region 397507	1316 bp upstream
Rr570574	regulatory region 570574	1952 bp distal
Rr570576	regulatory region 570576	1083 bp distal
Rr570577	regulatory region 570577	493 bp distal
Rr570578	regulatory region 570578	745 bp distal
Rr570579	regulatory region 570579	703 bp distal
Rr570580	regulatory region 570580	383 bp proximal
Rr570581	regulatory region 570581	1339 bp proximal
Rr570582	regulatory region 570582	1602 bp proximal
Slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	Noncoding-Transcript-Variant
Tssr21807	transcription start site region 21807	1562 bp upstream
Tssr21808	transcription start site region 21808	1576 bp upstream
Tssr21809	transcription start site region 21809	1907 bp upstream
Tssr27774	transcription start site region 27774	1321 bp downstream