rs49602389 SNP Detail

Summary

• ID
  rs49602389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137383006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTCAGC CAGAAGCCCC
  ATATTCCATG AATGTATTTG GAAAACTTGA AGGTTCGAGT CATTTAATGC AGAGTTAAAC
  TGAGTAGGCT CTTCACCGCG ACTTGCTCCA GGGGTTATCA CAGCCAGAGA ACTGCAAAGA
  CACATCATGT GTGTTGGGTG TGATAAAAAT TAATACTGCA TCAAAAGGAA AAATGGACCC
  Y
  GTCGAGACAG AAAACTACAA CTGACTGAAA TATTATGTTA CTTATTTTGT TGTTGGATTA
  AAAATGTGAA GAAAAGCTGC ATTTTGCATT TTATTCATGA TATTCACTGT TTCTGTTTTT
  AGGGATCTAA AATTGCTTAG GTATTTTTTT TTAAATTAAG AACTCTAGGA GTGTGGACAC
  TTTACCCTTT CTTAGAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60805576	NES16482670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49602389					SNP	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805576	NES16482670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137383006 () rs orientation: forward

Symbol	Name	Function Class
Gm70880	predicted gene, 70880	within coordinates
Rr419604	regulatory region 419604	1020 bp distal