rs49600571 SNP Detail

Summary

• ID
  rs49600571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138784327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT GGACACATGG TACCTGAGCC
  Y
  AGTCCCCTGG CAGAATGTAG AATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135960458	ENSMUSSNP2594461	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss320982573	CHEV_3_138741530	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49600571					SNP	T	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138784327 () rs orientation: forward

Symbol	Name	Function Class
Rr586244	regulatory region 586244	1979 bp distal
Rr586245	regulatory region 586245	345 bp distal
Rr586246	regulatory region 586246	1357 bp proximal