rs49600530 SNP Detail

Summary

• ID
  rs49600530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115996132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACCACACCAA AGCATGCTCA CTGTCAGACA TGGCTGGAAA GGAAGGCTTT
  W
  CCCCACTGTT CTGGTGACAA ATGTTTTAGG CCAATTGGGA TGGGGCTAAA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133574569	ENSMUSSNP3165112	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49600530					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115996132 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	1367 bp distal
Rr637139	regulatory region 637139	1089 bp distal
Rr637140	regulatory region 637140	1897 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	mRNA-UTR