rs49600106 SNP Detail

Summary

• ID
  rs49600106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118601895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCCTTAT TGCTGACATC AGAGGCCTGC CTGTGTTATT
  CCCTGCTCTG TGATGTCAAG GTCACCCCTT TTGTCTTTTA AAGCACAAAC GCACCCCACC
  Y
  CCTACCCCAC AGAACTTTTA GAGGTTTTAT ATAGGGAGCT GCCAAGGGAA GATACAAGCA
  TGGCTGTGGA GGTGCTGCCT TATAGAACCT GGAAAGACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133584433	ENSMUSSNP988756	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321925648	CHEV_6_118574952	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49600106					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118601895 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637498	regulatory region 637498			1405 bp proximal
Rr637499	regulatory region 637499			1509 bp proximal