rs49599198 SNP Detail

Summary

• ID
  rs49599198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19400482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAATTTTA GCAGGAGAAT
  CTGTTGCATA GCATTTGCTT TCTCAGGACT GTGCCAATAG TGCTTTCATT TCAAGGACTT
  TTCCCAGGAA TTCCTGCCTT CAGTTGTCTG GGCACCCCCT TACTTCTTTT TTCCAACACC
  TTTCTTCCCC TCACTAGATT TCATTTATTT TGTTGCTTAA TTTTTCCCCA AGTCTTTTTT
  W
  AAAATAATAT TTCCCTAAAA TTTCGCTCAG AGTTTCAGTT TACCAATCAC AAAAATTCCT
  TGTTCTTTGA CTGCTTCATT TTTTTTTTTT TCAGTTAAAC TCTGGAGAGC GGGCACCTTA
  GTTATTTCCA TCTGTCATGT TGATTTCTTA TCACACAAAA TAAAAAATAA AAGTGATTAA
  CATTTTATAT TGGAGAATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134667101	ENSMUSSNP1650400	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49599198					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19400482 () rs orientation: forward

Symbol	Name	Function Class
Rr573976	regulatory region 573976	1927 bp proximal