rs49599161 SNP Detail

Summary

• ID
  rs49599161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85181681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCAGG GAGGCCCTCC
  CTCTGGTGCC CTGTCCCAGG AAGAAGCAGG GTCCTTAAGA ATTGCTGCTG GTAGGGGAAT
  TCAGTGAATT ATGTACCAGG TCTAGTGTTT GGTATGTTGC AAGTTTTAAA AATTTCTACT
  AAACTTCTGG AGTAGCTGTT CTGTTTTATT GAAAGGCCGT CCATAAGGCC TCTCAGAATC
  R
  GGACCTCGGT GTTCCAAACT GATGGCTCCA CAGAGTTCCA GATGTGCAGT ATGATGGCTG
  GTTAAGCCAG AAAGCGACCT GCACTCCATA AAGCAGTGGC CGAAGATGTC TGGCACTGTG
  GGTTACCACA GAACCTACAC CTGGGAGCCA GCTCTAGAAG GTCCTACGTT AACCTCTCAA
  GATCGTTTTC TCAGGAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52449461	NES15419251	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49599161					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52449461	NES15419251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85181681 () rs orientation: forward

Symbol	Name	Function Class
Dlst	dihydrolipoamide S-succinyltransferase	816 bp downstream
Rps6kl1	ribosomal protein S6 kinase-like 1	342 bp downstream
Rr469797	regulatory region 469797	1974 bp proximal