rs49596951 SNP Detail

Summary

• ID
  rs49596951
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147604261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTGTCTCCAG TTCATCCATG GAATCTATTT TATTTACTTC
  CACCAGGGAA TCTGGGTGCC ACTGTGTGCT CTGAAGTCAA CTCTTCTATA CTTAATATCT
  C
  TGAATACAAT GGGCCTATGA ATATCAAGTT CATTATTTTA GCATTGGCTA ATATCCACAC
  ATAAGTGAAT ATATTCCATA TTTCTCCACC TGTGTCTGGT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147966977	ENSMUSSNP2051100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49596951					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147604261 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	664 bp downstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	within coordinates
Rr604494	regulatory region 604494	within coordinates
Rr604495	regulatory region 604495	288 bp proximal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	1717 bp upstream