rs49591038 SNP Detail

Summary

• ID
  rs49591038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCCAAC ACATTTCACA
  TCATACTTTT TTTTTCTAAA TACCATCTGA GCTGTTGGGT AGAGAATGGA TTTGAATGGA
  TTTGTTGAGA GTCAAGAGTT GGTTCCAGTG AAAATTCCAC TGAAATAGAT ATGCAATTCA
  TCTGGATGTA AAACTCATGA GACTTATTAT TGACGGGTTA TGAGTTAGAA ATAAAGAATG
  R
  CTATATTTAT AGCTTCCTAG CACTGATAAC AAAGTGCTAG TACTCTTTTA TCTTCCATAT
  CTTACGCTTC CAGAGGTTGG GGTGAGCCCA GAATTTGGGG GAACCAACAT ACAGGCAGTA
  GCAGGGTATC TGCTCTTTGG AGGCTGAAGG AGAGAAGTCA TTTCCTCACC CTTTCCTCGT
  GGAGACTGAC GACACTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246431	ENSMUSSNP4349575	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321100058	CHEV_4_44087449	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49591038					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1510 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1810 bp distal
Rr591150	regulatory region 591150	1313 bp distal
Rr591151	regulatory region 591151	1580 bp distal
Rr591152	regulatory region 591152	391 bp distal
Tssr41483	transcription start site region 41483	1884 bp upstream
Tssr41484	transcription start site region 41484	1846 bp upstream
Tssr41485	transcription start site region 41485	1556 bp upstream