rs49590061 SNP Detail

Summary

• ID
  rs49590061
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108478582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGT CCCCTACCTC TCCTTGCCTC
  G
  GTGCTATTAA TTATAAAGTG GTGTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147188598	ENSMUSSNP5823671	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321252713	CHEV_4_108293990	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49590061					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108478582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Intron
				Noncoding-Transcript-Variant
Cpgi14562	CpG island 14562			712 bp distal
Gm12743	predicted gene 12743			1456 bp upstream
Gm20731	predicted gene, 20731			1544 bp downstream
Rr597202	regulatory region 597202			1547 bp distal
Rr597203	regulatory region 597203			1435 bp distal
Rr597204	regulatory region 597204			348 bp distal
Rr597205	regulatory region 597205			357 bp proximal
Tssr38307	transcription start site region 38307			1391 bp downstream
Tssr38308	transcription start site region 38308			1358 bp downstream