rs49589632 SNP Detail

Summary

• ID
  rs49589632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122211387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGCTGTT ACACGTGGCT GTTTACGAGC TTGCACCCAC
  AGACAAGGCC AGAGCTTTTG AATATTGTGC GATAACGTCT TCTGCCGGCT CGGACTCACA
  R
  TCCACTGGAA CAAACTTAAT GTTCTGGAAC CAGGTCACCT TTTAAAGGCG ACTTCAAAGC
  AAAACTAAAC CAGTGGCCCT TTCACCAGTG ACATCGGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135741258	ENSMUSSNP416484	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320911456	CHEV_3_122120656	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49589632					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122211387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13768	CpG island 13768	1815 bp proximal
Rr397985	regulatory region 397985	1843 bp upstream
Rr584325	regulatory region 584325	1073 bp proximal
Rr584326	regulatory region 584326	1603 bp proximal