rs49589042 SNP Detail

Summary

• ID
  rs49589042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAAATC ACATTGAGCC
  TTAGAGCCTT CTTCCATGTT ACTTTCTCTG TTTCTTGCTA ACTATTTACC ATTTTGGATA
  TTCAGTCATA GGTAGGTAGG ATTATTTAAA TCTTCTAAAT GTTTTTTTTA AATAAATTAA
  CTCCCTTATG TGTGTGTGTG TGTGTTTCTG TGTGCATGTG GAAGTCAAAG GGCAGAGACA
  R
  CTTATAGGAG CTTATTCTCT CCTACCGTGA TGATTCTGGA CATTGAACTT GGTTCTAAGG
  CTTGGCAGCA AGCACCCTTA GCCATGGGGT GATTTCATTG GCCTACATCA GCATTTAAGT
  AAATTGTTTA CTGGGGATGT CACTGAAGTC AGTCGTTTGT ATCATAAATA ACTGGAAACT
  CAGTACCTTT AGAAAAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135837715	ENSMUSSNP1775162	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320946908	CHEV_3_126344238	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49589042					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1469 bp distal
Rr584665	regulatory region 584665			178 bp distal
Rr584666	regulatory region 584666			within coordinates
Rr584667	regulatory region 584667			1810 bp proximal