rs49588882 SNP Detail

Summary

• ID
  rs49588882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71149359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTACCTG CCTACTGCTA
  GGATTAAAGG CAAGTTCTGC CAAGCCAGAC CAACCAAGCT GAGTTTGCTT GTTTTTAAGC
  AAAACTTTTA TCTGTATGAT TGAGTTTATT GTGTAGAGAC ATGTTTATTT GAACAGACTC
  ACAAAAGCAA AGGGGGAAAG TGAAGAGACC TTCTTCACCG GAGACTTGAA TAACTAAAGG
  Y
  ACGCGTTCTT GTCCCTACAA CCACTCAGAA TTAACAGTAT GGCTGGGTGG CTGGGTGGAG
  TAGAAAATGC CTTTGATTCT AGAGCTTGGG AGGAAGAGAA CTCTGTGAGT TCAAGGCCAG
  CATGGTCTAT TTAGTGAGAC AAGACAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAACACACAA CAATTAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60272822	NES15767964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49588882					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272822	NES15767964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71149359 () rs orientation: forward

Symbol	Name	Function Class
Gm41610	predicted gene, 41610	276 bp upstream
Rr530331	regulatory region 530331	561 bp proximal
Rr530332	regulatory region 530332	1504 bp proximal
Tgif1	TGFB-induced factor homeobox 1	1841 bp downstream
Tssr149210	transcription start site region 149210	1485 bp upstream
Tssr149211	transcription start site region 149211	1408 bp upstream
Tssr149212	transcription start site region 149212	264 bp upstream
Tssr149213	transcription start site region 149213	142 bp downstream