rs49588413 SNP Detail

Summary

• ID
  rs49588413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127084224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CATTTTTGGG GGGAAATTCC TCTAGTTTTG AATGTCTTTG TTTTTTGAGA
  W
  AAGGGTCTCA TCCCAGGCTG GCTTCAAACT TACTATGCAG CAAAGTATAG           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147524301	ENSMUSSNP5316986	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49588413					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127084224 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	mRNA-UTR
Rr564475	regulatory region 564475	1887 bp distal
Rr564476	regulatory region 564476	1098 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	1853 bp downstream