rs49587641 SNP Detail

Summary

• ID
  rs49587641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8241917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACACAGTT GTGTTAGGAC
  AACTCAATCA AAACAAACAT CAGCATCTCA AAACAAAAAA CTATAGCACT AAAGATAACA
  AGGTTAGGGC TGGAGAGATG GCTCAGCGGT TAAGAGCAGT GACTGCTCTT CCAGAGGTCC
  TGAGTTTAAA TCCCAGCAAC CACATGGTGG GTCACAACCA TATGTAATGG GATCTGACCC
  Y
  CTCTTCTGGT GTGTCTGAAG ACAGCTACAG TGTACTCATA TACATAAAAT AAGTAAATAA
  ATCTTTGTTT TAAAAAAATA AAAAGATAAC AAGGTTCTTT TCTGGTCACT GTCTTACCTG
  GCAAAGTTTT GTTTGTTTTC AGGGAGCATT GCAAAACCTT AGTTTGGAGG AAGAAAAGGA
  CTATACTTGT TCAAGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132964793	ENSMUSSNP4653412	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49587641					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8241917 () rs orientation: forward

Symbol	Name	Function Class
Rr626362	regulatory region 626362	921 bp distal