rs49587000 SNP Detail

Summary

• ID
  rs49587000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141166255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAATTT CAGTCCATGT
  TTCTAGCTAC CAAAATGAGT ACTTAACACA AGGCACACAG TTCAATATAA GTTTAATCCT
  TTGGTCAGAG TGATTGAAGG ACTGGTCAAA ACCAAGTGGT CATGGCCCAA GTTTGGTCAA
  GGGACTACTT TCTGGATTTT GTTGGCCACA TGAGAATAGG GTTATGTTTT ATGCTAATAT
  Y
  GATAATGGTA AAAACACTGT AAGTCAGAGC TTCCAAGGCT TGCAGTACAA CCACAAGTCT
  CTTTATGAAG CCAAAACATA AGTAAGTTTT TAGGTGTAAA ACATGACTGC GGAAATCATT
  CTGGCACTAA GAAATATCAA CTGTGCTTCT TGGACAGGCT GTTTTCTTCT GAGTAAAAAT
  AATATATCAT AGGTTTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092753	NES16592431	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss320992345	CHEV_3_141123458	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49587000					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092753	NES16592431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141166255 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	1931 bp proximal