rs49581053 SNP Detail

Summary

• ID
  rs49581053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7830972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAAGGA AACACAATCC
  CCATGCTACG CATTGAAATT TGTGAGACTA TGTCAACAAC AGAACCAGTC AGTATGCACA
  TTACTGTTTC GCTTTCAAAG CAGGATTTGA AACACACAAA GTAAGTGTCA CCTGTTCCAT
  TTACAACAAA TGTATTCTGC TTCTGGTGAG CCACCAATGC AAACAGCTGA TTACTGTGGT
  R
  CTTGTTCCAG GAAGCGAGAC AATACAGCCT AACGTCAGGG AGTCTGACCT GAGGAGCAGC
  AGACACTGAG ATGACGTGAG TTCCTGGTGC ACACCTGGCA GACTTTGCTT TCAAGCTAAC
  CCGTGAGGCA TTGTCTGGCC GCTTCCCTTG AGGTTGAAAG TATTTTCTAG ACGTTCTTAG
  TCTACCTGGT CCTGTTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60861848	NES15993138	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49581053					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861848	NES15993138	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7830972 () rs orientation: forward

Symbol	Name	Function Class
Rr626323	regulatory region 626323	within coordinates