rs49578861 SNP Detail

Summary

• ID
  rs49578861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATCCCA GTTTCCTTTG
  GCCAAAAGTA CTAAACAACA CTGTAAACAT CACCCAGCTT CATACAGCTG CAGTAACCCA
  GTTACCGAGG TCGTGCTCGT GTGTGTGGCC CCCCACTACT GCTTCCACAA TTACTGTCCA
  TTGCATATTT TATACAATGA ATACTGTTAT TTATATATGC ATAAAATGAT CAAGTTTTTT
  Y
  CTCTATACAA AGACATCCTC TTCCAGTGTA AGAGCGATGT CACTTGGAAT GCCAATTCCC
  TAAGCCCCTT TACTTCCCAG GAGTGGATTT TGCAATTTTG GAAGCATTTA TCAGAAGGTA
  ATGCTGCTCT CTGGTGGTCT GCTTTCTCAC TCTGCCTGAA TCAGTCTTGT TCCCCAGTGG
  TGCTGTGAGG AGATGACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61095956	NES16609923	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49578861					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61095956	NES16609923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			859 bp upstream
Rr586924	regulatory region 586924			13 bp proximal
Rr586925	regulatory region 586925			988 bp proximal
Tssr36027	transcription start site region 36027			857 bp downstream
Tssr36028	transcription start site region 36028			877 bp downstream
Tssr36029	transcription start site region 36029			915 bp downstream