rs49576413 SNP Detail

Summary

• ID
  rs49576413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52206618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTATGC CATCCCCTCA
  CTGGACCAAA GGGACCTTGC TCCATCCTTT CTCTGGGGCC TGACTGCAGA GGTTTCCCCC
  CCAACCCCCC GCATATTCTG TGCTTACTTG TCAGGCCAGG CTTCCCCACG ACTTGGGGCT
  TTCCCGGGTC TTCTGTCTGT CTGGAACATG GTGTCTGCCT TTCCCGTAGC CCATCGGCAT
  R
  CACCTCACCA TTCGTGCAGT CTTCCCAACG TTTGTGCTCC GTGTTCCATC CATTTGGGGG
  AGGGGGGAGT GTTATTTTTA TTTTTCATAG GAGGTGGGAC CTTGCCACAG CAGAATCTTC
  CCAAGAACAC GCATCTTCTC TGCTCTATAT ATTCCTTTAC TTAGGATGTA GTGGGTACTG
  GCCAGGTACT GTCGCAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60410068	NES15916026	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49576413					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410068	NES15916026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52206618 () rs orientation: forward

Symbol	Name	Function Class
Foxo1	forkhead box O1	Intron
Rr576497	regulatory region 576497	3 bp distal
Rr576498	regulatory region 576498	299 bp proximal