rs49574057 SNP Detail

Summary

• ID
  rs49574057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5152207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAATGTG CCAGAGGGAA
  AAATACAAGA TACCATAAAA ATCCTAGAAA TCAACCTTGT ATGACCAGCT TGTTTTTCTT
  GTGTCCTAGC TTGTTTTTTT CTCAAATAAA ACTGTTAAAA TAGTAATGAA TAGCAAAAGA
  CAAAAGTGTA GAATTTTTCC AAGTCCTCAC TTGAGTTGTA TGCATTTTCA AAAAGCATGG
  Y
  CATAATCATT GTCTTATGGG GAGATCAGAA AAGAATTATC TGGCACATCT CTAGTATCAC
  ACAGAGAATT GTAACAGAAA ACATATGTAA AGGTATCAAT TTTCACAAAA AAACAAACAT
  TTGTCAGCAG GGAGTGGTGA GGAGAGAGAA TTTAAGGTTT GTTTGTTGAA GCCCAGATGG
  ATAGATAAAT GAATATAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366986	NES15869416	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49574057					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366986	NES15869416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5152207 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	1206 bp proximal
Rr573165	regulatory region 573165	1664 bp proximal