rs49572739 SNP Detail

Summary

• ID
  rs49572739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137133848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGCATT CTGACTTTCA
  AAAGCTCTCT TACAACTGTG TACGGTGCTC TATACCTGGG ATTCCAGCAT CAGAGAAGTA
  GGCAGAAGGG CTGTGGTTCA AGATCAGCTA AGGTTATGTG AGACTGTCTC AAAGAAAGGA
  AGAAAGATCC GCAATGAGAT CTTACTCCCT CTACTGGTGT TTCTGAAGAC ACCTACAGTG
  W
  ACTCATGTAT AATAATAAAT AAATCTTAAA AAAAAAAAAA GAGAGTGGGG CAGGCGATGT
  AGCTCAGTGG GTAGAGTGCC TGCCTAGCAT GCGTAAAGCT CTGAGTTCTA TGCCTAGCCC
  TGCAGAAGTG GGAGTGGTGA CACTTGCCCA GAACCCCACC ACTCAGGAGG TGGAAACAGG
  AACAAGAAGA CAGGAACACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147604946	ENSMUSSNP4246344	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49572739					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137133848 () rs orientation: forward

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Intron
Rr602614	regulatory region 602614	19 bp distal