rs49572167 SNP Detail

Summary

• ID
  rs49572167
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCACCT GCCACATCCT
  AGCTGCTCAG CAGGAACCTG TCTGGTTTTC AGTCAGAGTT TCCTGTGCAG GTGGCGGAGG
  ATTTTGAAAT GCTTGAAACG AAGCCATCAC ACCCACTTGA AATAGTTTCT CTCATCTGTG
  TGATAAGAGG TGGGTGGCAA AAATAAGTTC ACAGAGCCTA TTACTTGGAG CTGAGATCAC
  S
  GATTAAATGT CTTGAATGGG GAAAAAAATG TATTGGTTGC ACTTAGAATA TTTTCTCTGA
  CCTTTCTTAC CTTGAATTCA GAAAGAAGGC AGTTTTCTCA TGTTGGAGGA ACGCTGACTA
  ATTCCCTGTA CCTCCTTCAC TGTCGAGCAT CTGACTCATG TGTATTTAAG GGAACTAGCT
  GATGACTGGA CTCATGCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135838260	ENSMUSSNP525587	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320947065	CHEV_3_126363900	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49572167					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1397 bp upstream
Gm43006	predicted gene 43006			1659 bp downstream
Rr397996	regulatory region 397996			932 bp upstream
Rr584670	regulatory region 584670			1835 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			880 bp proximal