rs49568443 SNP Detail

Summary

• ID
  rs49568443
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95288661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCCGGTC CAGATGCCTC CTCCGCCTGA GTAACGCCCA
  CCCTCTAGTC TGCGGGCTCC TCCACTCACC TGGAGCGGAG GGTGCGCCTC GGAGCGTCCC
  A
  AGATCCCCGA CCGGCGGACT GTCCGGCTAG CACTCTCCTC GGTTTCTCTC CGGTTCTCTT
  CTGCTAGGGG TCCCCAAGCC TTCGAGGGAG CCGCGAGAC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136828226	ENSMUSSNP2500551	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49568443					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95288661 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	mRNA-UTR
Gm35915	predicted gene, 35915	853 bp upstream
Gm37805	predicted gene, 37805	796 bp upstream
Rr684785	regulatory region 684785	1024 bp distal
Rr684786	regulatory region 684786	820 bp distal
Rr684787	regulatory region 684787	646 bp distal
Rr684788	regulatory region 684788	623 bp distal
Rr684789	regulatory region 684789	464 bp distal
Rr684790	regulatory region 684790	104 bp proximal
Rr684791	regulatory region 684791	758 bp proximal
Tssr86547	transcription start site region 86547	817 bp upstream
Tssr90903	transcription start site region 90903	1860 bp upstream
Tssr90904	transcription start site region 90904	500 bp downstream
Tssr90905	transcription start site region 90905	576 bp downstream
Tssr90906	transcription start site region 90906	593 bp downstream
Tssr90907	transcription start site region 90907	619 bp downstream
Tssr90908	transcription start site region 90908	632 bp downstream
Tssr90909	transcription start site region 90909	673 bp downstream
Tssr90910	transcription start site region 90910	695 bp downstream
Tssr90911	transcription start site region 90911	742 bp downstream
Tssr90912	transcription start site region 90912	1159 bp downstream