rs49567007 SNP Detail

Summary

• ID
  rs49567007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151793228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAGATT GAAGGAGCTG
  AAGGGGATGG CAACCCCACA GGTAGACCAG TGGTGCCAGC TAACCTGGAC CCCTGGGAGC
  TCCCAGAGAC TGAGCTAACA ACCAAAGAGC ATGGGCTGCT CAGAGGCCCC TCACATATGC
  AGCAGACAGA GGACTGCCTT GTCTGACCTC AGTGGGAGAA GGTGCCTAAT CCTACAGGGA
  Y
  TTGATGCACC AGGATGGAGT GATATGGGGG GGGGGGGGCG GAGACCCCTC TCAGAGGTGA
  AAGATAGGGC ACTTGGGGGA GGAACTCTGA GAATGGGAAC CAGGAGGGGG CAGCATTTGG
  GATATAAATG CATAATTTTT TTTAAATTTA GAAAACCAAT ACAACAAAAC AAAGAGTGCT
  GCTCAGGGAA GGCCTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136100640	ENSMUSSNP952439	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321027960	CHEV_3_151750555	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49567007					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151793228 () rs orientation: forward

Symbol	Name	Function Class
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	1567 bp proximal
Rr587444	regulatory region 587444	1814 bp proximal