rs49565606 SNP Detail

Summary

• ID
  rs49565606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15398340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTATGG TATATTTTCT
  GTCAGTGAGC ATCTGTCTAG GATGACTGAT TCTATGTCCT AGGAATAACT GAATTTATAA
  AACTACCTGC TTAGTAGTTA TTCTCTTTCT CTAAAATATT TTATAAGTAA AATCTGACTC
  ATTTTCTGAG GGAAACTGTG TTTCTCTCCT TTAGTATGGT TTCTTTAAGA CATATGAAGA
  Y
  GATTTTTCAC ACGTCAGATA ATTTGAATCA AAAATACGTG AATGAATAAG AACTCTCTCA
  TTTTATTCTC CATAATCTTT TCTCATATTC ATACTGGTGT TTGTTTTGTT TTGTTTTTTT
  GTTTGTTTGT TTGTTTTTAA TTGGAGAAAT CACAATTTTA AAAGCATTTC ACTTCAATCA
  AGTATCAACC CTGGTTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60866321	NES15981647	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49565606					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866321	NES15981647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15398340 () rs orientation: forward

Symbol	Name	Function Class
Foxp2	forkhead box P2	Intron
Rr626663	regulatory region 626663	482 bp distal