rs49562316 SNP Detail

Summary

• ID
  rs49562316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129189331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGTGTGTGCA TTAGTGCAGT TTGTTGAGGT GTAGGGACTC
  TGGGGGTTGA GCCCAGGGCT TCACACAGGC TAGTCAAACA ATAAATAGCT TTACTCATAG
  Y
  CCTCTTTAGA CTTGAGACAG GGTCTAAGTT GTCTAGCCTA GTCTTGAACT CACCCAGTAG
  CTCGGGCAGG CCCTGAGTTT GAGATCTTTC TGCTTCAGCC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147437945	ENSMUSSNP5330772	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49562316					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129189331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1379 bp distal
Rr600195	regulatory region 600195	within coordinates
Rr600196	regulatory region 600196	367 bp proximal
Sync	syncoilin	Intron