rs49562039 SNP Detail

Summary

• ID
  rs49562039
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115511275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACCCCATA CACATATCCA CAAACAATCG AGCGAAACCT
  TACAACTTTA ACATAATTAT TTCTATTAGA ATGGAAATAT AAAAACTAAA ATCTTGAAGC
  W
  ACTTGAAGCC CTTATCAGGA AGCAAGGGTG GTAGTTATAA AATTCTAAAA CTTAGGACAC
  GCTATACTCA AAGCATTATG CTGTCTGATG AGGCCGTGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60931462	NES16196928	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	T	T	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49562039					SNP	T	A	T	A	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931462	NES16196928	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115511275 () rs orientation: forward

Symbol	Name	Function Class
Gm36355	predicted gene, 36355	within coordinates
Rr636981	regulatory region 636981	344 bp proximal