rs49561374 SNP Detail

Summary

• ID
  rs49561374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55439137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC TTGGCTTTTA AAATTTTTCA
  R
  AATATCCATT TTTATCTACA GCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135188579	ENSMUSSNP4520686	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320775337	CHEV_3_55335638	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49561374					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55439137 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk1	doublecortin-like kinase 1			Intron
				Noncoding-Transcript-Variant
Rr576959	regulatory region 576959			75 bp distal
Rr576960	regulatory region 576960			49 bp proximal
Rr576961	regulatory region 576961			924 bp proximal