rs49558942 SNP Detail

Summary

• ID
  rs49558942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17595151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTGCATGCTC CCAAAACGAC CTTGGATTTC AGATGTGAAG
  ACAACAACAA CAAATTCTTA TCTTCACTCT GAAATTTGGA AAATGTAAGA CACTCTTAGC
  Y
  TCAGGCACTC CTTTTAAAAA AAAGTATTTT ACACACACAC ACAAATCATT CTAACTTTCT
  TTCCTAAGTG TACAACAAAT TTTAATGATA AAATAGCCTC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133018329	ENSMUSSNP4814670	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49558942					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17595151 () rs orientation: forward

Symbol	Name	Function Class
Gm53318	predicted gene, 53318	within coordinates
Rr626818	regulatory region 626818	534 bp proximal