rs49558458 SNP Detail

Summary

• ID
  rs49558458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:19530193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCATCCT GTTTTGAAAG
  CATTCCTAAG GCCCCAGATT GACAGAGAAA AACAATTCAT ATTCTCCCAT GTGGTTAACA
  AGTCCTTTCA ATCTAGTGGA GAAGCATACA AATGACACAA CTTGAGGACA TCTTTGCCAT
  TTGTCCATCA GATGTCCTCA GTAAGTCTTT GTCCTCTGGA ATACTTTGTT TCAACAGTGG
  Y
  CTGCCATGCC TGTCAAGTGG CCAGCTTTCA CCTACAGTTG TCATTGAGAG AAAATGAATT
  AATAGCAATG AAAGAAGTTG TTTGCTACAG CAAAGCAAAG TATTACAAGA TAGCCCCATA
  ATCTACTTCC AGCTTAAAGA GATAGAAGCA ATATAAATAC ACAAAACAGA AAGCGAACAA
  CCATTTTATT AGATTGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626576	NES15515309	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49558458					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626576	NES15515309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19530193 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	Intron
Tssr118551	transcription start site region 118551	1790 bp downstream
Tssr118552	transcription start site region 118552	56 bp downstream
Tssr118553	transcription start site region 118553	1063 bp upstream
Tssr118554	transcription start site region 118554	1515 bp upstream
Tssr121590	transcription start site region 121590	1675 bp upstream
Tssr121591	transcription start site region 121591	792 bp upstream
Tssr121592	transcription start site region 121592	224 bp upstream