rs49558415 SNP Detail

Summary

• ID
  rs49558415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31510401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTTTCT GATGGCTAGG
  GATGTTGAAC ACTTTAAAAA AATATTTATT AGCTATTTTT ACTTCTTTTG AGAATGGAGC
  CTATTTCATT GTTTTTTTTT TTTTTTGTTG TTGTTTTTGT TGTTGTTTTT TTTGTTGTTG
  TTTGTTTTTG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTTTGTAG
  R
  CCAGGCTGGC CTCAAACTCA GAAATCCACC TGCTTCTGCC TCTCAAGTGC TGGGATTAAA
  GGCGTGTGTC ACCACCACCC TGCCCATTGT ATTTTTGATT GCTTCTTTTT TCAACAGAGT
  GTCTTAGTTT AGTGTGACTT CTATTTCTGT AAAAGAAATG TTTTACTTCA ACATATAACT
  CTTAGGTCAC ATGCCATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134736253	ENSMUSSNP4322296	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49558415					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31510401 () rs orientation: forward

Symbol	Name	Function Class
Rr374770	regulatory region 374770	660 bp downstream
Rr574911	regulatory region 574911	1761 bp proximal