rs49558273 SNP Detail

Summary

• ID
  rs49558273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTCTGGAT TCATAGTTAA AGAAAATTAT TAGGTGACTT
  TCACCTTTTT TTCTTTTTAA TGTTTAATAT GGCTACTAGG GCTTACATCG TAACTCTATG
  R
  GCCAATAGTG ATTTAAGCAG CAGGGGCTAT GACTCAGTGG CATAGCACTT GACCATCATG
  TGCAAGGTCC CTGGCATTTA AACTCCAGTA CCTCCCTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135210098	ENSMUSSNP7198350	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320783873	CHEV_3_58685740	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49558273					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789239 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	568 bp upstream
Rr577289	regulatory region 577289	1051 bp proximal
Rr577290	regulatory region 577290	1638 bp proximal