rs49557348 SNP Detail

Summary

• ID
  rs49557348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGGGAA AGTATGAAAA
  AGCAAGAATA ACCCAGGTGC TCGGGAGGCA GAAGTAGGTG GAATTCTGGG CAGCCTAGTC
  TACAGAGTGA GTTCCATGAC AGCCAAAGGT ACACACAGAG GAACATTTTT TTTTTTCCAA
  AAATGAACAA ACAAAAGAGA ATTAATTTTG CCTTGTTTTA TTTTTAAATT GACAGCAGCC
  R
  CTAAGGACTA CTAAAGTTTT TTGGAAAAGA AAAATTACGA GTAAGAAGTA GACCATTGTG
  ACCGAAGAGA CAGATGCTGA GAAGCGGCGT GCCACTCAGG GGGAGCCATT AGATGCAAAT
  TAAGAGAGAT TACCAGGTTG GGGCTTCTGA ACTTACCGAA TCAAAGCACA CCCTGTTCAG
  AGCTGGTGCC TGTGTGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148344117	ENSMUSSNP1258881	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs49557348					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333942 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	807 bp proximal
Rr572142	regulatory region 572142	910 bp proximal