rs49555307 SNP Detail

Summary

• ID
  rs49555307
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90398045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACTCAC CTGTAGCTAG
  GTTGTCAATT TGTTCCCGGA GCTCTACTTG GCTTTCTCTG CAAAGTGGTA CAAAAGTCTA
  CAACGGTCAG TGACTGGGAC GCGGGAAACG AATTCTACTT ATTCCCCAAA TACTGAGACA
  AGCCAACCTC AACTTCAAGG CCTCACCCAG GCCCTTCCGC CTATTTACCC AGTCTCAACA
  K
  CAGTGTCTCA AGAATGTATC TAGTATTTCT TCGGGGCCCC GCCCCTACAA AGCCAGTTCC
  CTAGGCCCCG CCCCCAGCAA CCCGGTCCTG CACCTGACCG CGTGCACGTG AGAGTCGAGC
  TGCTGCACCG CGGGTCGCAG GAACTCCAGG AGCCCCTCGG CAAAGAGGTC GCGGCCTGTG
  GGCCCCGCCA CTGGGGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60424442	NES15924353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49555307					SNP	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424442	NES15924353	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90398045 () rs orientation: forward

Symbol	Name	Function Class
Rr397812	regulatory region 397812	260 bp upstream
Rr580375	regulatory region 580375	285 bp proximal
Rr580376	regulatory region 580376	300 bp proximal
Rr580377	regulatory region 580377	412 bp proximal
Rr580378	regulatory region 580378	736 bp proximal
Snapin	SNAP-associated protein	Intron
Tssr34231	transcription start site region 34231	1581 bp upstream
Tssr34232	transcription start site region 34232	within coordinates
Tssr34233	transcription start site region 34233	44 bp downstream
Tssr34234	transcription start site region 34234	237 bp downstream